| Gene | RNAi | Also known as | Flybase ID | Annotation symbol |
|---|---|---|---|---|
| CG10600 (2) | 31276 (III) | FBgn0032717 | CG10600 | |
| cdep (1) | 2008R3 (III) | FBgn0265082 | CG44193 | |
| Cad99C (1) | 3733 (III) | CA-10 | FBgn0039709 | CG31009 |
| Cad99C (2) | 27212 (III) | CA-10 | FBgn0039709 | CG31009 |
| brv1 | 31496 (III) | FBgn0036874 | CG9472 | |
| Beclin-1 (Atg6) (2) | 5429R-1 (III) | l(3)00096, DmAtg6, beclin | FBgn0264325 | CG5429 |
| ATPsyn-beta (2) | 37812 (X) | ATPsyn-beta, ATPsyn-β, β-ATPase, ATPB, ATP syn-β | FBgn0010217 | CG11154 |
| APC (1) | 51469 (III) | APC1, D-APC, dAPC, dAPC1 | FBgn0015589 | CG1451 |
| Ank2 (2) | 5115 (III) | SP2523, Dank2, ESTS:149B10S | FBgn0261788 | CG42734 |
| Actn (2) | 7760 (III) | fliA, l(1)2Cb, EG:133E12 .1, GA17, α-actinin | FBgn0000667 | CG4376 |
| CG11247 | 52116 (III) | FBgn0037120 | CG11247 | |
| CG11180 (2) | 28629 (III) | FBgn0034528 | CG11180 | |
| CG12950 (1) | 12950Ra1 (III) | side-VII | FBgn0037736 | CG12950 |
| CG18335 (2) | 52471 (III) | FBgn0033610 | CG18335 | |
| CG15269 | 51506 (III) | BG:DS04929 .3 | FBgn0028878 | CG15269 |
| CG31731 (1) | 11082 (X) | Eato, BG:DS00797 .5 | FBgn0028539 | CG31731 |
| CG31626 | 1975R-2 (III) | FBgn0051626 | CG31626 | |
| CG3339 (2) | 41918 (III) | FBgn0039510 | CG3339 | |
| CG42672 | 31737 (III) | FBgn0261554 | CG42672 | |
| CG4896 (2) | 48197 (III) | FBgn0031319 | CG4896 | |
| CG4896 (1) | 26652 (III) | FBgn0031319 | CG4896 | |
| CG6272 (1) | 34156 (III) | Irbp18 | FBgn0036126 | CG6272 |
| CG7708 | 28613 (III) | FBgn0038641 | CG7708 | |
| CG9784 (1) | 9784R-1 (III) | lincRNA.S9473 | FBgn0030761 | CG9784 |
| CG9701 (2) | 3359 (III) | FBgn0036659 | CG9701 |
