| Gene | RNAi | Also known as | Flybase ID | Annotation symbol |
|---|---|---|---|---|
| CG14838 | 14838R3 (III) | FBgn0035799 | CG14838 | |
| CG12484 (2) | 12484R2 (III) | side-VIII | FBgn0086604 | CG12484 |
| CG17739 | 36542 (III) | FBgn0033710 | CG17739 | |
| CG30417 (1) | 25619 (III) | tbrd-3 | FBgn0050417 | CG30417 |
| CG33288 (2) | 51190 (III) | FBgn0053288 | CG33288 | |
| CG42255 | 32092R-3 (III) | FBgn0259140 | CG42255 | |
| CG4887 (1) | 4887R-3 (III) | FBgn0031318 | CG4887 | |
| CG5984 | 52489 (X) | FBgn0039500 | CG5984 | |
| CG7607 (1) | 7607R1 (III) | FBgn0036145 | CG7607 | |
| CG9572 (2) | 44804 (III) | FBgn0031089 | CG9572 | |
| CTCF | 30713 (III) | dCTCF | FBgn0035769 | CG8591 |
| Dis3 (2) | 35090 (III) | dDis3 | FBgn0039183 | CG6413 |
| dE2f2 (2) | 1071R1 (III) | dE2F2, E2f, E2f2 | FBgn0024371 | CG1071 |
| Dscam2 (2) | 41890 (X) | FBgn0265296 | CG42256 | |
| ebi (1) | 40862 (III) | FBgn0263933 | CG4063 | |
| Ent1 | 11907R2 (III) | FBgn0031250 | CG11907 | |
| fra (2) | 29909 (III) | DCC | FBgn0011592 | CG8581 |
| GI | 27721 (III) | p150Glued, p150, DCTN1, p150/glued, DCTN1-p150 | FBgn0001108 | CG9206 |
| hiw (1) | 26998 (III) | FBgn0030600 | CG32592 | |
| Kirre (2) | 6696 (III) | duf, Duf/Kirre | FBgn0028369 | CG3653 |
| ih (2) | 29574 (III) | DMIH, CR30068, Ih | FBgn0263397 | CG8585 |
| kto (2) | 23142 (III) | Med12, Trap230, psg14, dTRAP230 | FBgn0001324 | CG8491 |
| Marcal1 | 34701 (III) | FBgn0031655 | CG3753 | |
| lgl-IR | 51247 (III) | lgl, p127, dlgl, p127l(2)gl, l(2)gl | FBgn0002121 | CG2671 |
| mgl (2) | 33940 (III) | Megalin, LDLR | FBgn0261260 | CG42611 |
